Hi mlane1060,
You'll want to make sure that you've added the Bonus pay type to your employee's profile. Here's how:
- Click Workers on the left menu.
- Go to the Employees tab.
- Select the employee that you like to add the bonus paycheck.
- Click the pencil icon beside the Pay section,
- Go to #4 option, then click the edit icon.
- Under the "You can also pay" option, tick the Bonus box.
- Click Done.
Once done, create a separate bonus paycheck. Please follow the steps below.
- Click Workers, then select Employees.
- Click Run payroll. Then select Bonus only.
- Select the applicable settings for the bonus paycheck. Then click Continue.
- Select the employee. Then enter the Bonus amount.
- Select edit (pencil) icon beside "Payroll options".
- Select the payroll options you want . Then select Apply.
- Select preview and submit payroll.
- If you selected As net pay, the pay stub includes Employee Taxes Paid by Employer in the pay section.
Here's a link that you can check for reference: Employees And Payroll Taxes.
Please reply to this thread if there's anything that you want to know. I'll always make sure to get back to you.