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I use preprinted checks with Quickbooks Desktop. The information printed on the preprinted checks prints crooked. We use the same paper when printing from other applications and do not have this issue.
Let's ensure your QuickBooks is updated to the latest release, andrewsjacob.
Next, we can run the QuickBooks PDF & Print Repair Tool. This will help you in resolving any problem with the printing alignment and other related issues.
Here are the steps in resetting your temp folder permission:
If the steps given above didn't do the trick, you can try the other recommendations in this article: Troubleshoot PDF and Print problems with QuickBooks Desktop.
Let me know how it goes, I'll be here if you need further assistance.