Hello there, @RD0102.
Allow me to share some details about the things you can do when matching paid invoices to multiple transactions from your bank.
Currently, the option to match one invoice with multiple transactions recorded in your bank is not available. You can match multiple invoices to a single bank transaction.
As a workaround, you'll have to create one invoice per transaction and deposit it alone to match it properly to your bank transactions. I'd be happy to guide you on how to do it properly. I've also added some screenshots below for your additional reference.
- Create an invoice.
- Receive the invoice payment and put it in the Undeposited Funds.

- Deposit the transaction to the Bank account where the funds were deposited in real life.

- Match your deposits to your bank transactions on the Banking page.

I've included this article you may use when you're ready to assess your business financials: Reconcile an account in QuickBooks Online.
Please don't hesitate to let me know in the comment section below if you have other questions. It's my pleasure to assist you further. Take care and have a wonderful day ahead.