Allow me to share some details about the things you can do when matching paid invoices to multiple transactions from your bank.
Currently, the option to match one invoice with multiple transactions recorded in your bank is not available. You can match multiple invoices to a single bank transaction.
As a workaround, you'll have to create one invoice per transaction and deposit it alone to match it properly to your bank transactions. I'd be happy to guide you on how to do it properly. I've also added some screenshots below for your additional reference.