Can I ship my orders using Shopify and invoice my orders with QB online?

Hi there, @SecretWeaponry.

It's my pleasure to have you here on the Community page, and I can share with you some insights about how QuickBooks works with Shopify.

Usually, your fees, payouts, and orders with all of the sales tax data are imported into QuickBooks once you've synced your Shopify Data to QuickBooks Online (QBO). To do that:

1. Open this link: https://quickbooks.intuit.com/app/apps/appdetails/shopify/en-us/.
2. Tap on Learn more.
3. Click on Add app.

Moreover, you can also open these articles to learn more about the seamless integration between Shopify with QBO:

• Shopify for QuickBooks Online
• Sync your Shopify data with QuickBooks
• Available Shopify Apps

On the other hand, you can also check out the topics from our help articles to learn more about the different ways on how to manage transactions in QuickBooks.

If you have any other questions about your sales transactions, please let me know by adding a comment below. I'm more than happy to help. Thanks for coming, and have a great weekend!

I appreciate the links but does that mean an absolute NO to my whole question?

Hi SecretWeaponry,

I got a simple answer to your question. The sync will only import sales data from Shopify and not the other way around. Therefore, invoicing from QBO to Shopify is not available.

I see that my colleagues already provided you with links, so I won't add more. Just let me know if you have other questions.

Have a good one!

Thank you Jess. We do not want the invoices in Shopify at all. Besides being able to utilize invoicing in QBO where we could add the shipping to the invoice total, we were hopeful to have a way to manage orders that were only partially filled since Shopify does not have a mechanism by which to do this. 
But I am now reading, in great detail, https://quickbooks.intuit.com/app/apps/appdetails/shopify/en-us/ and to say the very least - I am underwhelmed and disappointed.