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Thank you for dropping your post here in Community, @matt94.
You can add multiple banking entries in a single journal transaction. Then, we'll use the class feature to track the cost centers.
Let me guide you on creating a journal entry:
1. On the left navigation pane, click on New icon.
2. Under Other column select Journal entry.
3. Click on the dropdown under Account.
4. Select the correct account and fill in the needed information.
5. Click on Save.
You may also want to know how to print a journal entry, feel free to read this article: Print a journal entry report.
Please let me know if you have other questions, I'm always here to help.