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Join nowHi there, @amydbreslow.
QuickBooks Self Employed only offers a simplified invoicing feature. It doesn't have the ability to apply partial payments to an invoice. As a workaround, you may consider invoicing the customer for the partial payment. Then, let the customer know about the details in the Description field.
Furthermore, we have an awesome Progress Invoicing feature available in QuickBooks Online. It lets you split an estimate into as many invoices as you need. Check out this article for more info: Set up and send progress invoices.
I'm only a post away if you need any further assistance managing your invoices. Have a great one.
Thank you!
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