Payments made from wrong company

Hello there, @lbacutting. I'm here to assist you with the payments that you've made from the wrong company and transfer the funds to avoid duplication.

You can create a Check or an Expense and transfer the funds to the correct company. Then make a Bank Deposit for the receiving company. I'll show you how.

1. Click the Banking menu.
2. Choose Transfer Funds on the drop-down selection.
3. Pick the account you want to transfer the funds from.
4. Select the account you want to transfer the funds to.
5. Enter the desired amount you want to be transferred.
6. Click the Save & Close button.

Once done, you can create a Bank Deposit for the receiving company.

1. Go to the Banking menu at the top menu.
2. Select Make Deposits.
3. In the Payments to Deposit window, choose the payment you want to include with the deposit.
4. Click OK and it will go to the Make Deposits window.
5. Tap the Deposit To list and choose the bank account you want to deposit into.
6. Enter the necessary information.
7. Hit Save & Close.

Also, regarding the checks that are tied to 1099s and W2s, you can void the paycheck. However, depending on your processing time, the debit from your bank account for payroll taxes and direct deposit may not be stopped.

1.  Select the Employees menu, then select Edit/Void Paychecks.
2. Change the Show paychecks through/from dates to the date of the paychecks you need to void, then press Tab on your keyboard.
3. Select the check-in question and select Void.
4. In the pop-up box, enter YES and select Void.
5. Select the checkbox to agree to the terms and conditions of voiding the paycheck.

For more details about the steps, I've shared above, check out these articles: 

• Record and make bank deposits in QuickBooks Desktop
• Delete or void paychecks

Once everything is recorded, you can now reconcile your account. For detailed steps about the process and how to fix issues when reconciling, check out these articles: 

• Reconcile your bank account with QuickBooks Desktop.
• Fix issues when you're reconciling in QuickBooks Desktop

You can always get back to me if you need further assistance reconciling your accounts or managing your QuickBooks. You’re always welcome to tag me in your reply. I’ll be more than happy to work with you again.