The invoice feature in QuickBooks Self-Employed is for recording purposes only, junit7408.
With that said, we're unable to know which bank account the payment will go through.
Rest assured, I'll take note of your suggestion and share it with our Development team. They'll analyze it may be added as may be added to our future updates.
I've also added these articles in case you need help in creating invoices:
I'm always around if you still need help in QuickBooks!