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Yes, you can record an expense transaction for the admin fee. To enter an expense, select Expense under Vendor from the New (+) icon.
Or, you can use a sales receipt, choose Undeposited Funds in the Deposit to section, not a bank account.
Then, make a bank deposit to the desired bank account and add the fee as a negative amount under the Add funds to this deposit section.
For additional reference about recording donations or charitable contributions, check out this article.
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