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Hello there, annmarie63.
Let me share an idea in making a bank deposit in QuickBooks Online.
You can enter a single bank deposit entry and split or allocate the amount into two sub-accounts by clicking on +New, then Bank Deposit. Here's a sample screenshot:
You may check out this article for more information: Record and make bank deposits in QuickBooks Online.
I'm adding this link that you can use for future reference: Reconcile an account in QuickBooks Online.
Be sure to get back to us if you still have other banking concerns. I'll be around if you still need assistance. Have a wonderful day!