Thank you! I was getting hung up on the refund coming from the vendor and was selecting that vendor in the Received From column.
I could also use a vendor credit, which I tried. Using this way, I was getting hung up on the visual in the Vendor >> Transaction List. When you use a vendor credit, then match the deposit to the credit by classifying it to Accounts Payable, then using a bill/expense/check to zero out the outstanding amount, total on the transaction list page shows that the amount is subtracted twice. However, when I check the affect of the transaction on the Income Statement, the expense account is correct and Net Income is correct. It's just a visual oddity on the Vendor Transaction List page.