Hey there, @ControllerBVTC.
Once you set up and use progress invoicing in QuickBooks Desktop (QBDT), the total percentage used on the estimate should reflect when you create an invoice.
If the percentage column isn't updating, you can perform some basic troubleshooting steps to address the issue. There might be data damage in your company file that's causing this unexpected behavior.
You can follow these steps to address it.
First, update QuickBooks Desktop to the latest release. Doing this will help you resolve minor issues in your desktop file. Here's how:
If you're still getting the same behavior, run the Verify and Rebuild Data tools. Verify Data self-identifies the most commonly known data issues within a company file while Rebuild Data self-resolves most data integrity issues that the Verify Data finds.
I'm always here to help if you have any other concerns or questions. Just tag my name in the comment section and I'll get back to you as soon as I can. Have a great weekend.