Hello LUNIC,
With the Automated Sales Tax, QuickBooks calculates the tax amounts based on the following:
Since the calculations are now based on yours and client's addresses, we can no longer create our own sales tax rates when creating invoices. However, we still have an option to override it:
To get the correct calculation for your invoices, it'd be best to follow the Steps 1-7 of this article: Set up and use automated sales tax in QuickBooks Online.
If you have additional clarifications about it, please let us know. Additional information would be much appreciated.