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Hi there, @lmoore2. You'll want to edit the W-4 of your employee and remove the extra withholding to step 4 box C (Extra withholding).
I'd also recommend reaching out to our Payroll Support team to have the tax information updated. They can take a closer look into your account using their tools and have the tax information updated.
These instructions are also available from our guide on contacting QuickBooks Online Payroll support for your convenience.
Please check this article to see information about the new changes to the Federal W-4 and how to enter and print a W-4 for employees: What’s changing with the Federal W-4?.
Please know that you're always welcome to post if you have any other concerns. Wishing you and your business continued success.