Thanks for sharing your concern on the QuickBooks Community page, @Dlpettit.
When you set up your company payroll for direct deposit, we can only select one bank. Thus, the option to pay from more than one bank account for direct deposit is unavailable.
I can see how this feature would help you track locations for payroll tax forms. Thus, I suggest sending feedback to our developers. They can review your suggestions and more likely include this preference in future updates. Here's how to send feedback:
- Click the Help option.
- Select the Send Feedback Online option.
- Click the Product Suggestion option. A pop-up window displays.
- Enter your feedback suggestion.
- Select the Send Feedback button. The feedback is sent.
For additional reference, you can check these articles:
Moreover, you can run several payroll reports in QuickBooks to help view useful information about your business and employees.
Should you have additional questions about direct deposit payroll in QuickBooks, simply add them to the thread. I'll be more than happy to help. Have a good one.