How to pay multiple invoices from a single vendor without it recording as a batch payment.

As long as the vendor invoice is entered in "enter bills" you use paybills, check off all that apply for that vendor and set the pay source to the CC

Correct, but it will show as a single payment for the sum of all invoices.  I am trying to have them separated out as individual payments so I'm able to import the charges at the end of the month and reconcile. 

Hi there, mwine. 

 I’m here to add additional details on how to select multiple invoices when receiving your customer payments in QuickBooks Desktop (QBDT)

This can be done by placing a checkmark to the left of the invoices against which you want to apply the cumulative payment amount received.

Here's a refresher: 

1. Open QuickBooks.
2. Go to Customers.
3. Pick Receive Payments.
4. Enter all the information needed.
5. Put a checkmark beside the invoices you want.
6. Choose Save & Close or Save & New.

Here are a couple of articles that you may find helpful:

• Record An Invoice Payment.
• Receive and process payments in QuickBooks Desktop

In case you have other concerns or questions about receiving payment in QBDT, you can always tag me in your reply. I’m always here to help. Take care!