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You can refund your customer's checking account by signing in to QuickBooks Payments and then reverse the transaction from the Processing Tools drop-down. There you can search for the transaction and select the sale you want to refund.
Let me show you how:
However, if you aren't subscribed to QuickBooks Payments, you can use refund receipts. Make sure you haven't created a credit memo because this would cause a double refund.
Here's how:
I'll add this video article as your guide in recording refunds based on various scenarios: Record a customer refund in QuickBooks Online. It includes how to refund a customer's overpayment.
If you wanted to learn more about alternative ways in processing refunds in QuickBooks Payments, here's your reference: Void or refund transactions in QuickBooks Payments.
Please let me know if you have more questions. I'll keep my notifications open. Have a good one!