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Buy nowThanks for keeping us updated with the results when performing the steps provided by my colleague above, @T_Arkenberg.
When matching downloaded transactions in QuickBooks Online (QBO) to manually created data, you'll need to have the exact date or details to match.
In your case, when receiving the invoice payment, it should deposit on the Undeposited Funds. Here's how:
Then, create a bank deposit and select the Bank account where the actual payment was deposited.
Once done, you can now start matching the recorded invoice payments and downloaded transactions. By doing this, you'd avoid getting duplicates. Let me share this guide for the step by step process: Categorize and match online bank transactions in QuickBooks Online.
For future help, here are some links that cover all the details on how to perform the following tasks in QBO.
That's it! If there's anything else you need help with, please feel free to let me know. I'm always here to help. Have a great day!