You may have connected the same bank account to the Shogo app and QuickBooks. Thus, it downloads the same set of transactions. Let me guide you in removing these duplicates.
First, you'd have to decide whether to disconnect your Shogo App from QuickBooks or unlink your bank instead. This way, you'd avoid getting duplicate records. You can follow these steps to remove the Shogo App:
Go to the Apps menu.
Select My Apps.
Click the Action ▼ drop-down menu.
Note: If you can't find Disconnect in the menu, select Settings, then locate the Disconnect button on the settings page.
Complete the short questionnaire.
Select Confirm Disconnect to remove the app from your company profile.
Meanwhile. here's how to unlink your bank from QuickBooks:
Go to the Banking menu or Transactions menu.
Choose the Banking tab.
Locate the bank account.
Click the pencil ✎ icon.
Select Edit account info.
Mark the Disconnect this account on save checkbox.
Note: If QuickBooks is downloading new transactions, you won't see this option. Wait a few minutes for the update to finish and try again.