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Hello there, nikeofbelegost-g.
Currently, QuickBooks Self-Employed cannot integrate with Shopify. You'll have two options to bring your transactions in QBSE. You can either:
Meanwhile, you can categorize your deposits and reimbursements as Transfers. This can be applied to scenarios like you use your personal funds to pay the business expense and you reimburse yourself. They'll not be included to estimate your taxes. You can browse the following articles for more details:
You can also seek advice from your accountant about this.
Meanwhile, if you want to integrate Shopify and other third-party applications, you might want to consider QuickBooks Online. You can see in this link the QuickBooks Online plans, pricing, and their features: https://quickbooks.intuit.com/online/#.
If you decided to migrate from QBSE to QBO, you can browse this link to see the process: Switch from QuickBooks Self-Employed to QuickBooks Online.
Feel free to get back to us if you need anything else. Have a great day!
For your additional reference
Consider switching to QB Online or QB Desktop
https:// quickbooks.grsm.io/US
https:// quickbooks.grsm.io/us-promo
You may need a connector to link your account to Shopify. Explore one of the connectors available in the market.
https:// synder.grsm.io/quickbooks
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