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At this time, we can only set one employer accounts in a company for direct deposit payroll in QuickBooks Desktop (QBDT). The good news is, you can change the bank account that your direct deposit funds are withdrawn from if you wish to. For your reference, check out this article: Change your direct deposit bank account for QuickBooks Desktop Payroll.
Also, here are the lists of articles you can read through about direct deposit payroll in QBDT:
As always, visit our help articles in case you need tips and related links in the future.
Let me know if there's anything you need assistance with. I'm a few clicks away to help. Have a good day!
If your bank will accept NACHA files from you, you can use our BRC Direct Deposit File Creator to create them, which supports multiple company bank accounts.
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