Connect for streamlined payroll processing

A laptop computer with Paychex product displayed.


QuickBooks Time and Paychex Flex integration allows payroll and job costing information to move automatically and seamlessly between Paychex Flex, Paychex’s end-to-end HR platform, and your current time tracking solution. Explore how easily QuickBooks Time integrates with Paychex Flex.

Paychex Payroll Services

Any Business. Any Size. Paychex Payroll Services save you and your business time so you can focus on what matters most.

HR Services

Our total HR solution provides you the HR services, support, and benefits that your one-of-a-kind business needs.

Time and Attendance

Save time and money by more accurately tracking employee time with the last timekeeping technology.


24/7 support (online, phone, or chat), plus a dedicated payroll specialist.


  • Time savings — With no manual entry, employee data is automatically linked to your Paychex Flex account
  • Convenience — A seamless flow of data eliminates the need for manual entry or edits
  • Peace of mind — Eliminate errors in the hiring and onboarding process

More benefits

  • Integrate QuickBooks Time with Paychex Flex to simplify bookkeeping, payroll invoicing, and expense tracking. Real-time synchronization makes this integration fast, easy, and secure while saving time, money, and reducing data-entry errors.
  • Administrators and HR personnel can transfer key employee information into QuickBooks Time. Payroll and project time tracking information is pushed into Paychex Flex giving users valuable insights on a project’s true labor costs.
  • This integration uses Paychex Flex as the “source of record” for the initial information used to establish new workers or update existing workers within QuickBooks Time. QuickBooks Time is used as the “source of record” for the payroll and job costing information that is imported into Paychex Flex.