The Clear Payment button will remove any check marks from the selected invoices and reset the form back to when you first brought it up.
When bringing up the screen, select the customer you received a payment from. QB will then bring up any open invoices you have for them. Place a check mark in the box for any invoices you want to apply the payment to. By default, QB will apply payment to full open balance of invoice. If it's a partial payment, you can adjust the payment amount per invoice.
Near the top select where to put the payment. (Undeposited funds or a bank account) and then click one of the green buttons at the bottom right. Save and New or Save and Close.
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As a relatively new user, I have to say that I also find Clear Payment totally confusing. I think it's a US/UK thing, over here if we clear payment then it's the same as 'payment received'. The box could say 'amend payment' instead?
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