Welcome to the Community. I can provide clarification on what will happen if you leave the payment method blank when receiving a payment.
QuickBooks will leave the Payment Method field blank if the correct option wasn't selected. I've attached a screenshot below to show you how it looks like.
To correct this, we can edit the payment you recorded and enter the method:
Click Sales in the left navigation panel.
Go to the Customers tab.
Click the customer's name.
Find and select the payment.
From the Payment method drop-down menu, choose the right method.